IPOP: Integrated Plant Omics Platform

Utility / Transcriptome-Wide Association Study

TWAS analysis

Please select a species and a model to perform TWAS analysis.

· You can select "To view existing results" option to view existing results.

Click here to see an example .

· Also you can select "To analyse your own data" option to perform TWAS analysis on new datasets.

Parameters for TWAS analysis

Species*

Please Selecte

Zea mays ( RefGen v4 )

Arabidopsis thaliana ( TAIR10 )

Please choose a species for the analysis .

Model*

Please Selecte

no data

Please Select a TWAS model for analysis.

P-value*

Please set cut off P-Value, default 0.05.

Optional

To view existing results To analyse your own data

Phenotype*

Please Selecte

no data

Please choose a phenotype for analysis.

Chromatin*

Query by Chromosome

no data

Please select chromatin for analysis.

Genome Location*

Chromatin

Query by Location

no data

Please select location for analysis.

Start

End

Please upload your GWAS summary file:

1. Please refer to the Example File(ath) to upload your data

· Column name is required.

· TAB to be used as a delimiter.

2. The maximum size for GWAS summary data in each sample is 20 MB.

3. Please make sure that your data have used the same reference genome with ours.

File*

Retrive results

Job ID

Type a job ID to check its status. Like 0V9yfmFFALTd3qwP.