deepEA is a convenient, freely available, web-based platform that is capable to support deep analysis of epitranscriptome sequencing data with several general and specific functionalities. Currently, deepEA consists of six modules: Data Preparation, Quality Control, Identification of RNA Modifications, Functional Annotation, Multi-omics Integrative Analysis and Prediction Analysis Based on Machine Learning.
Zhai J., Song, J., Zhang T., Xie S., Ma, C. (2020). deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data. Plant Physiology https://dx.doi.org/10.1093/plphys/kiaa008