high-throughput nucleotide sequencing

PEA

Plant epitranscriptome analysis

PEA: an Integrated R Toolkit for Plant Epitranscriptome Analysis

**MOTIVATION**: The epitranscriptome, also known as chemical modifications of RNA (CMRs), is a newly discovered layer of gene regulation, the biological importance of which emerged through analysis of only a small fraction of CMRs detected by …

Transcriptome Dynamics during Maize Endosperm Development

The endosperm is a major organ of the seed that plays vital roles in determining seed weight and quality. However, genome-wide transcriptome patterns throughout maize endosperm development have not been comprehensively investigated to date. …

Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development

In angiosperms, the endosperm provides nutrients for embryogenesis and seed germination and is the primary tissue where gene imprinting occurs. To identify the imprintome of early developing maize (Zea mays) endosperm, we performed high-throughput …