Application of the Gini correlation coefficient to infer regulatory relationships in transcriptome analysis

One of the computational challenges in plant systems biology is to accurately infer transcriptional regulation relationships based on correlation analyses of gene expression patterns. Despite several correlation methods that are applied in biology to …


Gini-based transcriptiome analysis


Karyotype-based genome assembly for Brassicaceae species

KGBassembler: A Karyotype-based Genome Assembler for Brassicaceae Species

**MOTIVATION**: The Brassicaceae family includes the most important plant model Arabidopsis thaliana and many cruciferous vegetable crops. A number of close relatives of Arabidopsis and economically important Brassica species are being sequenced with …